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What is IMO (Intestinal Methanogen Overgrowth)?


Small intestine IMO

Intestinal Methanogen Overgrowth (IMO) is now a recognised condition within the field of functional medicine and gastroenterology. Often associated with chronic digestive symptoms, this condition is distinct from other gut microbial imbalances, such as Small Intestinal Bacterial Overgrowth (SIBO), though it shares some similarities. The overgrowth of methane-producing organisms (methanogens), particularly Methanobrevibacter smithii, can contribute to a variety of symptoms, including bloating, constipation, and abdominal discomfort.


What Is Intestinal Methanogen Overgrowth?

IMO refers to an excessive presence of methanogens in the intestines, small or large. Methanogens are not bacteria; they are a type of archaea, single-celled organisms that thrive in low-oxygen environments and produce methane as a metabolic byproduct. In the human gut, methanogens play a role in digesting complex carbohydrates. However, when they proliferate excessively, the increase in methane production can have adverse effects on gastrointestinal motility and contribute to specific symptoms, most notably constipation.

Though often grouped under the umbrella of SIBO, IMO is technically different, owing to the unique nature of methanogens. SIBO typically involves an overgrowth of bacteria in the small intestine, leading to excessive hydrogen production. In contrast, IMO is characterised by the dominance of methane-producing archaea, which requires distinct diagnostic and therapeutic approaches.


Symptoms and Clinical Presentation

IMO can be difficult to distinguish from other gut conditions because its symptoms often overlap with those of SIBO and irritable bowel syndrome (IBS). However, certain clinical features may raise suspicion for IMO, particularly:


  • Constipation: Methane has a known slowing effect on intestinal transit, often leading to constipation. This is in contrast to hydrogen-producing overgrowth, which is more commonly associated with diarrhoea.

  • Bloating and Gas: Excessive methane production can cause significant bloating and a sensation of fullness.

  • Abdominal Discomfort: Pain or discomfort in the abdomen may be a consequence of the altered gut motility and gas production.

  • Flatulence: The production of methane can also result in increased flatulence, which may be noticeable to patients.


While constipation is a hallmark of IMO, some patients may present with alternating bowel habits or symptoms that are not purely limited to constipation.


Diagnosis of IMO

Diagnosing IMO typically involves a breath test, which is also commonly used to detect SIBO. During the test, patients ingest a solution containing a fermentable sugar (such as lactulose or glucose). As gut microbes digest the sugar, they produce gases—either hydrogen, methane, or both—that can be measured in the patient’s breath. A diagnosis of IMO is supported by elevated methane levels (generally defined as ≥10 ppm of methane in the breath) during the test.


Causes and Risk Factors

The exact cause of IMO remains unclear, though several factors are thought to contribute to its development:

  • Altered Gut Motility: Reduced gut motility can create an environment conducive to methanogen overgrowth.

  • Diet: Diets high in fermentable carbohydrates may provide fuel for methanogens to thrive.

  • Gut Dysbiosis: An imbalance in the gut microbiota can allow methanogens to proliferate.

  • Previous Gastrointestinal Conditions: Conditions like IBS or chronic constipation can predispose individuals to IMO.

  • Medication Use: Certain medications, such as proton pump inhibitors or antibiotics, may alter the gut environment, promoting methanogen overgrowth.



What about stool testing to identify IMO?

While breath testing has long been the primary method for diagnosing Intestinal Methanogen Overgrowth (IMO), stool testing can also be helpful. Stool tests offer a non-invasive means of evaluating the composition of the gut microbiota, including the presence and activity of methane-producing organisms, primarily Methanobrevibacter smithii.

Stool tests can also provide a more complete picture of the microbial ecosystem in the gut. For patients with inconclusive breath test results, ongoing symptoms, or complex gastrointestinal issues, stool testing may offer valuable additional information that supports more tailored treatments.

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